PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G098000.4
Common NameB456_013G098000
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 319aa    MW: 35232.9 Da    PI: 6.1123
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G098000.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.53.6e-1655104255
                         HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         r +h+  E+rRR++iN++f++Lr+l+P+     ++K + a+ L +++eY+++Lq
  Gorai.013G098000.4  55 RSKHSVTEQRRRSKINERFQRLRDLIPNT----DQKRDTASFLLEVIEYVQYLQ 104
                         899*************************8....8*******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.107.8E-2451125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-1951125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.44453103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-1355104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.56E-1555108No hitNo description
SMARTSM003531.6E-1259109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MRTGKGSQEE EEYEEEEFGS KKGGFSSNQT MSFNPNNNST TNKDGKNNDK ANAIRSKHSV  60
TEQRRRSKIN ERFQRLRDLI PNTDQKRDTA SFLLEVIEYV QYLQEKVQKY EDSYQGWSSE  120
PAKLMPWSLV GHPQAIKNGS GPGATFARKF DENNTNINPT VITSGPNAVE TDPIRYVTSK  180
TMDCQTELAN NGTHLPIQGE NVLVHPLQRP VSETQSTECL VGNDIPINQQ EDLTIEGGTI  240
SISSVYSQGL LSALAQALQG SGLDLSQANM SVQIDLGKHA NRGLSAKEPH NCPHQAMTHL  300
RDVSSGEDSD NAQKRLKK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012464562.10.0PREDICTED: transcription factor BIM2-like isoform X1
SwissprotQ9CAA41e-106BIM2_ARATH; Transcription factor BIM2
TrEMBLA0A0D2W4J50.0A0A0D2W4J5_G
STRINGPOPTR_0010s14740.11e-123(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.14e-78BES1-interacting Myc-like protein 2
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]